Enrichment in phenotype: N (8 samples)
- 31 / 186 gene sets are upregulated in phenotype N
- 0 gene sets are significant at FDR < 25%
- 0 gene sets are significantly enriched at nominal pvalue < 1%
- 0 gene sets are significantly enriched at nominal pvalue < 5%
- Snapshot of enrichment results
- Detailed enrichment results in html format
- Detailed enrichment results in excel format (tab delimited text)
- Guide to interpret results
Enrichment in phenotype: R (5 samples)
- 155 / 186 gene sets are upregulated in phenotype R
- 4 gene sets are significantly enriched at FDR < 25%
- 4 gene sets are significantly enriched at nominal pvalue < 1%
- 16 gene sets are significantly enriched at nominal pvalue < 5%
- Snapshot of enrichment results
- Detailed enrichment results in html format
- Detailed enrichment results in excel format (tab delimited text)
- Guide to interpret results
Dataset details
- The dataset has 5225 features (genes)
- No probe set => gene symbol collapsing was requested, so all 5225 features were used
Gene set details
- Gene set size filters (min=1, max=500) resulted in filtering out 1 / 187 gene sets
- The remaining 186 gene sets were used in the analysis
- List of gene sets used and their sizes (restricted to features in the specified dataset)
Gene markers for the N versus R comparison
- The dataset has 5225 features (genes)
- # of markers for phenotype N: 2203 (42.2% ) with correlation area 33.9%
- # of markers for phenotype R: 3022 (57.8% ) with correlation area 66.1%
- Detailed rank ordered gene list for all features in the dataset
- Heat map and gene list correlation profile for all features in the dataset
- Buttefly plot of significant genes
Global statistics and plots
Comments
- Warning: Phenotype permutation was performed but the number of samples in class B is < 7, phenotype: study_design_13pat.cls#N_versus_R_repos
- With small datasets, there might not be enough random permutations of sample labels to generate a sufficient null distribution. In such cases, gene_set randomization might be a better choice.